Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs371532022 chr6:53170162 G/A 2.5E-5 509 22.6 21.6 14.8 KM Plot
LGG rs372076444 chr9:133357713 GGGGGGT/G 1.87E-5 506 22.73 21.3 14.98 KM Plot
LGG rs3731232 chr9:21978443 C/G 1.11E-16 509 NA 18.08 24.5 KM Plot
LGG rs3757757 chr7:127695857 G/A 7.37E-6 507 21.87 25.13 12.4 KM Plot
LGG rs376341008 chr5:169050015 A/G 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs3814628 chr10:11783789 G/C 2.46E-5 487 25.03 21.25 17.17 KM Plot
LGG rs3824006 chr7:127241980 C/T 5.15E-5 496 21.28 24.63 11.07 KM Plot
LGG rs3832749 chr11:125301192 AGAG/A 9.02E-5 500 21.65 25.33 13.87 KM Plot
LGG rs3849394 chr2:74401949 C/G 2.6E-5 495 21.7 24.23 11.57 KM Plot
LGG rs3899732 chr8:146189216 T/C 6.74E-5 493 23.92 22.12 21 KM Plot
LGG rs3924585 chr1:204166082 G/A 6.6E-6 493 22.6 21.7 6.77 KM Plot
LGG rs3924587 chr1:204165554 C/T 8.2E-6 499 22.6 22.82 7.18 KM Plot
LGG rs3943619 chr8:6179949 G/C 1.77E-5 507 22.47 23.8 7.72 KM Plot
LGG rs4048586 chr14:24422231 C/A 4.08E-5 508 23.58 21 15.53 KM Plot
LGG rs4073588 chr8:143428734 C/T 9.02E-5 505 23.63 19.57 9.25 KM Plot